Presentation: Clinical suspicion of cystic fibrosis

A one-year-old boy is referred to the paediatric clinic by his GP because of poor growth. He is tracking below the 0.4th centile with no easily identifiable cause. He has had several respiratory tract infections, which leads you to suspect that he may have cystic fibrosis (CF). The family moved to the UK recently and he did not have newborn screening.

Consider genomic testing for CF in a child with any of the following clinical features plus an abnormal sweat test (or in an urgent prenatal situation – that is, where a result may affect choices during pregnancy – in which case sweat testing would not be available):

• failure to thrive;
• recurrent chest infections;
• fat malabsorption (bloating, diarrhoea, difficult-to-flush stool); and/or
• neonatal history of meconium ileus.

Sweat testing must be performed in a recognised, experienced test centre or laboratory; an abnormal sweat test is defined as sweat chloride at over 30 millimolar with sufficient sweat obtained.

• Consult the National Genomic Test Directory. From here you can access the rare and inherited disease eligibility criteria, which provides information about individual tests and their associated eligibility criteria. You can also access a spreadsheet containing details of all available tests.
  • For those working within NHS Wales, please consult the All Wales Medical Genomics Service website for information on how to arrange testing.
• For information on the genes that are included on different gene panels, see the NHS Genomic Medicine Service (GMS) Signed Off Panels Resource.
• Decide which of the panels best suits the needs of your patient or family.
  • For clinical suspicion of cystic fibrosis in a child who meets the eligibility criteria given above, the appropriate test is R184 cystic fibrosis diagnostic test.
    • R184 is a compound test that includes targeted mutation testing of CFTR, followed by single gene sequencing and multiplex ligation-dependent probe amplification (MLPA) of CFTR.
  • As these tests do not include whole genome sequencing:
    • you can use your local Genomic Laboratory Hub test order and consent (record of discussion) forms; and
    • parental samples may be needed for interpretation of the child’s result. Parental samples can be taken alongside that of the child, and their DNA stored, or can be requested at a later date if needed.
  • The majority of tests are DNA-based, and an EDTA sample (purple-topped tube) is required. Exceptions include karyotype testing and DNA repair defect testing (for chromosome breakage), which require lithium heparin (green-topped tube).
• If your patient is diagnosed with cystic fibrosis, the result may have significant implications for family members. Consider referral to clinical genetics for counselling and carrier testing.
• Information about patient eligibility and test indications was correct at the time of writing. When requesting a test, please refer to the National Genomic Test Directory to confirm the right test for your patient.

For clinicians

• Genomics England: NHS Genomic Medicine Service (GMS) Signed Off Panels Resource
• NHS England: National Genomic Test Directory
• OMIM: 219700 Cystic fibrosis
• Patient Info: Cystic fibrosis

References:

• VanDevanter DR, Kahle JS, O’Sullivan AK and others. ‘Cystic fibrosis in young children: A review of disease manifestation, progression, and response to early treatment’. Journal of Cystic Fibrosis 2016: volume 15, issue 2, 2016, pages 147–157. DOI: 10.1016/j.jcf.2015.09.008

For patients

• Asthma and Lung UK: Cystic fibrosis
• Cystic Fibrosis Foundation
• Cystic Fibrosis Trust